If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ), 'gf_id' => 'HOM05D000681', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000681' ), 'data_identifier' => 'HOM05D000681', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000681', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '839', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p28810' => 'bna', 'A02p03670' => 'bna', 'A02p43520' => 'bna', 'A03p11030' => 'bna', 'A04p05290' => 'bna', 'A04p29660' => 'bna', 'A06p35240' => 'bna', 'A07p06610' => 'bna', 'A09p14570' => 'bna', 'A09p14590' => 'bna', 'A09p47510' => 'bna', 'A10p27550' => 'bna', 'Aa31LG1G12740' => 'aar', 'Aa31LG1G17090' => 'aar', 'Aa31LG2G1560' => 'aar', 'Aa31LG3G17200' => 'aar', 'Aa31LG4G11810' => 'aar', 'Aa31sc64G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1348' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4630' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.474' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.270' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1295' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3777' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.834' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.380' => 'aag', 'Actinidia00148' => 'ach', 'Actinidia03701' => 'ach', 'Actinidia03702' => 'ach', 'Actinidia04158' => 'ach', 'Actinidia04159' => 'ach', 'Actinidia11737' => 'ach', 'Actinidia11738' => 'ach', 'Actinidia12210' => 'ach', 'Actinidia14010' => 'ach', 'Actinidia14597' => 'ach', 'Actinidia20435' => 'ach', 'Actinidia22187' => 'ach', 'Actinidia27544' => 'ach', 'Actinidia31245' => 'ach', 'Ah.01g003230' => 'amhyb', 'Ah.01g014200' => 'amhyb', 'Ah.02g119750' => 'amhyb', 'Ah.06g189110' => 'amhyb', 'Ah.12g056530' => 'amhyb', 'AL2G10220' => 'aly', 'AL396U10010' => 'aly', 'AL3G37330' => 'aly', 'AL3G43140' => 'aly', 'AL5G16510' => 'aly', 'AL5G35610' => 'aly', 'AL5G35620' => 'aly', 'AL6G20350' => 'aly', 'AL8G37380' => 'aly', 'AL8G42320' => 'aly', 'Aqoxy1G01160' => 'aox', 'Aqoxy1G03333' => 'aox', 'Aqoxy2G01771' => 'aox', 'Aqoxy5G01993' => 'aox', 'Aqoxy5G02767' => 'aox', 'Aqoxy5G03387' => 'aox', 'Aqoxy7G00050' => 'aox', 'Aqoxy7G00963' => 'aox', 'arahy.Tifrunner.gnm1.ann1.00G2U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3GP07U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3Z5EIP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.423KP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5EKU9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7SWW0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EX28K6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G3SQ12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H8I0GA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J4K9CJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LC1BIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NV1IU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TJ4XJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TR14KI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XKH52J' => 'arhy', 'AT1G64550' => 'ath', 'AT3G54540' => 'ath', 'AT5G09930' => 'ath', 'AT5G60790' => 'ath', 'AT5G64840' => 'ath', 'ATR0564G351' => 'atr', 'ATR0665G202' => 'atr', 'ATR0665G649' => 'atr', 'ATR0680G411' => 'atr', 'ATR0824G244' => 'atr', 'ATR1132G076' => 'atr', 'Atru.chr1.3219' => 'acertr', 'Atru.chr11.46' => 'acertr', 'Atru.chr3.3548' => 'acertr', 'Atru.chr4.340' => 'acertr', 'Atru.chr9.1961' => 'acertr', 'AUR62000701' => 'cqu', 'AUR62005252' => 'cqu', 'AUR62005304' => 'cqu', 'AUR62005971' => 'cqu', 'AUR62007005' => 'cqu', 'AUR62007024' => 'cqu', 'AUR62011609' => 'cqu', 'AUR62014924' => 'cqu', 'AUR62016426' => 'cqu', 'AUR62019886' => 'cqu', 'AUR62028099' => 'cqu', 'AUR62029212' => 'cqu', 'BcaB01g00178' => 'bca', 'BcaB01g00179' => 'bca', 'BcaB01g00180' => 'bca', 'BcaB01g00181' => 'bca', 'BcaB01g04672' => 'bca', 'BcaB01g04673' => 'bca', 'BcaB01g04675' => 'bca', 'BcaB02g08446' => 'bca', 'BcaB07g29761' => 'bca', 'BcaB07g31474' => 'bca', 'BcaB08g37171' => 'bca', 'BcaC01g01723' => 'bca', 'BcaC01g06554' => 'bca', 'BcaC02g09061' => 'bca', 'BcaC02g10041' => 'bca', 'BcaC03g18282' => 'bca', 'BcaC03g18504' => 'bca', 'BcaC05g28144' => 'bca', 'BcaC07g39811' => 'bca', 'BcaNung00806' => 'bca', 'BcaNung02026' => 'bca', 'BcaNung02030' => 'bca', 'BcaNung06682' => 'bca', 'BolC2t06764H' => 'bol', 'BolC2t12427H' => 'bol', 'BolC3t13735H' => 'bol', 'BolC3t13737H' => 'bol', 'BolC3t19563H' => 'bol', 'BolC4t24929H' => 'bol', 'BolC4t25372H' => 'bol', 'BolC7t44854H' => 'bol', 'BolC7t44858H' => 'bol', 'BolC7t45658H' => 'bol', 'BolC8t47269H' => 'bol', 'BolC8t50581H' => 'bol', 'BolC9t54661H' => 'bol', 'BolC9t56744H' => 'bol', 'BolC9t59524H' => 'bol', 'BraA02t05335Z' => 'bra', 'BraA02t09280Z' => 'bra', 'BraA03t10417Z' => 'bra', 'BraA04t16232Z' => 'bra', 'BraA06t26446Z' => 'bra', 'BraA09t37105Z' => 'bra', 'BraA09t37107Z' => 'bra', 'BraA09t40208Z' => 'bra', 'BraA10t44807Z' => 'bra', 'C02p08470' => 'bna', 'C02p63610' => 'bna', 'C03p12690' => 'bna', 'C03p12710' => 'bna', 'C03p32740' => 'bna', 'C03p72650' => 'bna', 'C04p33610' => 'bna', 'C04p37980' => 'bna', 'C06p40000' => 'bna', 'C07p43300' => 'bna', 'C08p04670' => 'bna', 'C08p29720' => 'bna', 'C09p17670' => 'bna', 'C09p38830' => 'bna', 'C09p38840' => 'bna', 'C09p67620' => 'bna', 'CAN.G1298.35' => 'can', 'CAN.G1298.36' => 'can', 'CAN.G1755.7' => 'can', 'CAN.G3223.1' => 'can', 'CAN.G347.2' => 'can', 'CAN.G46.44' => 'can', 'CAN.G541.40' => 'can', 'CAN.G546.9' => 'can', 'CAN.G560.1' => 'can', 'CAN.G560.2' => 'can', 'CAN.G567.63' => 'can', 'CAN.G628.13' => 'can', 'CANSAT01G0682' => 'cansat', 'CANSAT21G2350' => 'cansat', 'CANSAT54G0821' => 'cansat', 'CANSAT56G2029' => 'cansat', 'CARHR009840' => 'chi', 'CARHR046390' => 'chi', 'CARHR164430' => 'chi', 'CARHR164440' => 'chi', 'CARHR164450' => 'chi', 'CARHR179800' => 'chi', 'CARHR179870' => 'chi', 'CARHR203400' => 'chi', 'CARHR274470' => 'chi', 'CARHR278850' => 'chi', 'Carub.0002s0020' => 'cru', 'Carub.0005s2116' => 'cru', 'Carub.0006s0837' => 'cru', 'Carub.0006s3252' => 'cru', 'Carub.0008s2147' => 'cru', 'Carub.0008s2567' => 'cru', 'Ca_01376_v3' => 'car', 'Ca_07071_v3' => 'car', 'Ca_15863_v3' => 'car', 'Ca_16302_v3' => 'car', 'Ca_16896_v3' => 'car', 'Ca_19302_v3' => 'car', 'Ca_28946_v3' => 'car', 'Ca_29440_v3' => 'car', 'CBR_g19498' => 'cbr', 'CBR_g20265' => 'cbr', 'CBR_g42041' => 'cbr', 'Cc01_g10540' => 'ccan', 'Cc07_g06650' => 'ccan', 'Cc07_g16310' => 'ccan', 'Cc08_g16470' => 'ccan', 'CDE02G0208' => 'cde', 'CDE02G2865' => 'cde', 'CDE06G2334' => 'cde', 'CDE06G2343' => 'cde', 'CDE08G1085' => 'cde', 'CDE10G0078' => 'cde', 'CDE10G0949' => 'cde', 'Cfa000441' => 'cfa', 'Cfa000447' => 'cfa', 'Cfa000462' => 'cfa', 'Cfa000465' => 'cfa', 'Cfa002759' => 'cfa', 'Cfa010343' => 'cfa', 'Cfa011960' => 'cfa', 'Cfa015862' => 'cfa', 'Cfa021772' => 'cfa', 'Cfa024681' => 'cfa', 'Cfa026484' => 'cfa', 'Ciclev10003917m.g' => 'ccl', 'Ciclev10006473m.g' => 'ccl', 'Ciclev10019068m.g' => 'ccl', 'Ciclev10025010m.g' => 'ccl', 'Ciclev10025045m.g' => 'ccl', 'Ciclev10028056m.g' => 'ccl', 'Ciclev10033898m.g' => 'ccl', 'CiPaw.03G134000' => 'cil', 'CiPaw.11G000800' => 'cil', 'CiPaw.11G115800' => 'cil', 'CiPaw.13G118800' => 'cil', 'CiPaw.15G145800' => 'cil', 'ClCG01G001830' => 'cla', 'ClCG01G016130' => 'cla', 'ClCG02G021420' => 'cla', 'ClCG04G005070' => 'cla', 'ClCG06G001150' => 'cla', 'COL.COLO4_03695' => 'col', 'COL.COLO4_10268' => 'col', 'COL.COLO4_10754' => 'col', 'COL.COLO4_11004' => 'col', 'COL.COLO4_11005' => 'col', 'COL.COLO4_31999' => 'col', 'Cpa.g.c37838' => 'cpa', 'Cpa.g.c44447' => 'cpa', 'Cpa.g.sc1.26' => 'cpa', 'Cpa.g.sc103.76' => 'cpa', 'Cpa.g.sc1802.2' => 'cpa', 'Cpa.g.sc1802.3' => 'cpa', 'Cre01.g023787' => 'cre', 'Cre01.g034950' => 'cre', 'Cre02.g095200' => 'cre', 'Cre04.g222700' => 'cre', 'Cre06.g265100' => 'cre', 'Cre06.g271850' => 'cre', 'Cre07.g335400' => 'cre', 'Cre08.g372250' => 'cre', 'Cre11.g467781' => 'cre', 'Cre11.g478128' => 'cre', 'Cre14.g615950' => 'cre', 'CsaV3_2G035850' => 'csa', 'CsaV3_4G029060' => 'csa', 'CsaV3_5G001980' => 'csa', 'CsaV3_6G014210' => 'csa', 'CsaV3_6G042400' => 'csa', 'CSS0003751' => 'camsi', 'CSS0011347' => 'camsi', 'CSS0012981' => 'camsi', 'CSS0026429' => 'camsi', 'CSS0028979' => 'camsi', 'CSS0032659' => 'camsi', 'CSS0043828' => 'camsi', 'DCAR_001373' => 'dca', 'DCAR_018780' => 'dca', 'DCAR_018781' => 'dca', 'DCAR_018782' => 'dca', 'DCAR_021320' => 'dca', 'DCAR_028348' => 'dca', 'DCAR_029862' => 'dca', 'Dinv02365' => 'din', 'Dinv12811' => 'din', 'Dinv12813' => 'din', 'Dinv19483' => 'din', 'Dinv25483' => 'din', 'Dinv29357' => 'din', 'Dinv34704' => 'din', 'Dinv39465' => 'din', 'Dinv42689' => 'din', 'Duzib106G1503' => 'dzi', 'Duzib147G1662' => 'dzi', 'Duzib150G0498' => 'dzi', 'Duzib150G1516' => 'dzi', 'Duzib168G2011' => 'dzi', 'Duzib168G2345' => 'dzi', 'Duzib170G1139' => 'dzi', 'Duzib205G1886' => 'dzi', 'Duzib264G0717' => 'dzi', 'ECA232G3656' => 'eca', 'ECA232G3747' => 'eca', 'ECA233G0834' => 'eca', 'ECA233G2785' => 'eca', 'ECA233G4245' => 'eca', 'ECA233G4280' => 'eca', 'ECA233G4463' => 'eca', 'ECA233G5022' => 'eca', 'ECA248G1494' => 'eca', 'EL10Ac4g09838' => 'bvu', 'EL10Ac5g10535' => 'bvu', 'EL10Ac5g12474' => 'bvu', 'EL10Ac6g13363' => 'bvu', 'EL10Ac9g22574' => 'bvu', 'Eucgr.B00896' => 'egr', 'Eucgr.B00981' => 'egr', 'Eucgr.B01070' => 'egr', 'Eucgr.B01233' => 'egr', 'Eucgr.B01238' => 'egr', 'Eucgr.B01879' => 'egr', 'Eucgr.B02970' => 'egr', 'Eucgr.E01026' => 'egr', 'Eucgr.I00319' => 'egr', 'Eucgr.J00857' => 'egr', 'Eucgr.J00895' => 'egr', 'Eucgr.L02862' => 'egr', 'FAN01G1937' => 'fan', 'FAN02G1366' => 'fan', 'FAN04G2935' => 'fan', 'FAN05G0123' => 'fan', 'FAN05G3783' => 'fan', 'FAN05G3874' => 'fan', 'FAN06G1871' => 'fan', 'FAN06G3135' => 'fan', 'FAN06G3376' => 'fan', 'FAN08G3024' => 'fan', 'FAN08G3564' => 'fan', 'FAN09G2067' => 'fan', 'FAN11G1944' => 'fan', 'FAN12G2804' => 'fan', 'FAN12G3683' => 'fan', 'FAN13G0722' => 'fan', 'FAN14G4608' => 'fan', 'FAN15G1461' => 'fan', 'FAN16G2718' => 'fan', 'FAN17G2234' => 'fan', 'FAN18G3277' => 'fan', 'FAN18G3879' => 'fan', 'FAN19G1795' => 'fan', 'FAN20G0730' => 'fan', 'FAN21G1409' => 'fan', 'FAN22G1073' => 'fan', 'FAN22G1082' => 'fan', 'FAN22G1428' => 'fan', 'FAN23G0462' => 'fan', 'FAN24G0338' => 'fan', 'FAN25G0700' => 'fan', 'FAN25G0771' => 'fan', 'FAN25G1281' => 'fan', 'FAN26G1956' => 'fan', 'FAN27G1163' => 'fan', 'FAN28G0951' => 'fan', 'FAN28G1262' => 'fan', 'FAN28G1994' => 'fan', 'FvH4_1g22620' => 'fve', 'FvH4_2g35540' => 'fve', 'FvH4_3g31100' => 'fve', 'FvH4_4g12320' => 'fve', 'FvH4_5g11480' => 'fve', 'FvH4_5g33701' => 'fve', 'FvH4_6g37180' => 'fve', 'Glyma.04G218900' => 'gma', 'Glyma.06G146900' => 'gma', 'Glyma.11G194700' => 'gma', 'Glyma.12G079400' => 'gma', 'Glyma.12G177500' => 'gma', 'Glyma.13G002500' => 'gma', 'Glyma.13G158600' => 'gma', 'Glyma.13G323200' => 'gma', 'Glyma.17G112700' => 'gma', 'Glyma.20G066600' => 'gma', 'Gohir.A02G135600' => 'ghi', 'Gohir.A03G030700' => 'ghi', 'Gohir.A03G030800' => 'ghi', 'Gohir.A07G119300' => 'ghi', 'Gohir.A08G111500' => 'ghi', 'Gohir.A08G111600' => 'ghi', 'Gohir.A09G110551' => 'ghi', 'Gohir.A11G198000' => 'ghi', 'Gohir.D03G046533' => 'ghi', 'Gohir.D03G137600' => 'ghi', 'Gohir.D03G137700' => 'ghi', 'Gohir.D07G123500' => 'ghi', 'Gohir.D08G124500' => 'ghi', 'Gohir.D09G107040' => 'ghi', 'Gohir.D11G233700' => 'ghi', 'Gohir.D13G238066' => 'ghi', 'Gorai.001G133500' => 'gra', 'Gorai.003G047600' => 'gra', 'Gorai.004G131200' => 'gra', 'Gorai.006G124600' => 'gra', 'Gorai.007G244600' => 'gra', 'GSVIVG01001014001' => 'vvi', 'GSVIVG01001694001' => 'vvi', 'GSVIVG01003144001' => 'vvi', 'GSVIVG01010674001' => 'vvi', 'GSVIVG01016021001' => 'vvi', 'GSVIVG01019300001' => 'vvi', 'GSVIVG01019609001' => 'vvi', 'GSVIVG01022235001' => 'vvi', 'GSVIVG01031505001' => 'vvi', 'GSVIVG01034906001' => 'vvi', 'HanXRQChr02g0055441' => 'han', 'HanXRQChr07g0189311' => 'han', 'HanXRQChr08g0214551' => 'han', 'HanXRQChr08g0225471' => 'han', 'HanXRQChr09g0259711' => 'han', 'HanXRQChr13g0396591' => 'han', 'HanXRQChr15g0493501' => 'han', 'Haze_06452' => 'cav', 'Haze_06454' => 'cav', 'Haze_06455' => 'cav', 'Haze_09121' => 'cav', 'Haze_23749' => 'cav', 'Haze_25051' => 'cav', 'Haze_26186' => 'cav', 'Haze_26933' => 'cav', 'Haze_26989' => 'cav', 'Haze_27208' => 'cav', 'Hma1.2p1_0375F.1_g138760' => 'hma', 'Hma1.2p1_0660F.1_g197670' => 'hma', 'Hma1.2p1_0737F.1_g210820' => 'hma', 'Hma1.2p1_1110F.1_g258260' => 'hma', 'HPP92_007170' => 'vpl', 'HPP92_013366' => 'vpl', 'HPP92_013367' => 'vpl', 'HPP92_013373' => 'vpl', 'HPP92_016893' => 'vpl', 'HPP92_016895' => 'vpl', 'HPP92_025719' => 'vpl', 'HPP92_025760' => 'vpl', 'Hund08168' => 'sun', 'Hund08172' => 'sun', 'Hund11369' => 'sun', 'Hund21729' => 'sun', 'Lalb_Chr14g0362721' => 'lal', 'Lalb_Chr14g0374491' => 'lal', 'Lalb_Chr18g0061111' => 'lal', 'Lalb_Chr22g0350351' => 'lal', 'Lalb_Chr23g0272391' => 'lal', 'Lalb_Chr24g0394841' => 'lal', 'Lj1C207G1' => 'lonja', 'Lj1g0006962' => 'lja', 'Lj2A160G61' => 'lonja', 'Lj2C1015T1' => 'lonja', 'Lj3g0001657' => 'lja', 'Lj3g0001760' => 'lja', 'Lj3g0004561' => 'lja', 'Lj3g0012170' => 'lja', 'Lj4A865T29' => 'lonja', 'Lj4g0003781' => 'lja', 'Lj5C63T16' => 'lonja', 'Lj6g0006526' => 'lja', 'Lj6g0016763' => 'lja', 'LjContig00201_ERROPOS200000g0027847' => 'lja', 'Lsat_1_v5_gn_0_441' => 'lsa', 'Lsat_1_v5_gn_1_62940' => 'lsa', 'Lsat_1_v5_gn_1_81780' => 'lsa', 'Lsat_1_v5_gn_1_81800' => 'lsa', 'Lsat_1_v5_gn_3_33421' => 'lsa', 'Lsat_1_v5_gn_4_137440' => 'lsa', 'Lsat_1_v5_gn_5_38441' => 'lsa', 'Lsat_1_v5_gn_6_43741' => 'lsa', 'Lsat_1_v5_gn_6_8920' => 'lsa', 'Lsat_1_v5_gn_7_114681' => 'lsa', 'Lsat_1_v5_gn_7_114741' => 'lsa', 'Lsat_1_v5_gn_7_114761' => 'lsa', 'Manes.02G005700' => 'mes', 'Manes.04G121000' => 'mes', 'Manes.11G051400' => 'mes', 'Manes.12G143100' => 'mes', 'Manes.15G173400' => 'mes', 'Mapoly0003s0123' => 'mpo', 'Mapoly0003s0135' => 'mpo', 'Mapoly0038s0051' => 'mpo', 'Mapoly0102s0020' => 'mpo', 'Mapoly0122s0045' => 'mpo', 'MBI02_g18929_MAGBIO' => 'mbi', 'MBI02_g20283_MAGBIO' => 'mbi', 'MBI13_g23287_MAGBIO' => 'mbi', 'MBI15_g17576_MAGBIO' => 'mbi', 'MBI18_g10202_MAGBIO' => 'mbi', 'MBI18_g16983_MAGBIO' => 'mbi', 'MBI19_g09305_MAGBIO' => 'mbi', 'MCO03G023' => 'mco', 'MCO03G322' => 'mco', 'MCO03G566' => 'mco', 'MCO04G423' => 'mco', 'MCO05G145' => 'mco', 'MCO07G138' => 'mco', 'MCO09G445' => 'mco', 'MCO11G002' => 'mco', 'MCO11G006' => 'mco', 'MCO11G704' => 'mco', 'MCO11G712' => 'mco', 'MCO11G776' => 'mco', 'MCO11G801' => 'mco', 'MCO13G268' => 'mco', 'MCO13G622' => 'mco', 'MCO15G031' => 'mco', 'MCO16G593' => 'mco', 'MD00G1033600' => 'mdo', 'MD00G1070400' => 'mdo', 'MD01G1020400' => 'mdo', 'MD01G1020500' => 'mdo', 'MD05G1058200' => 'mdo', 'MD05G1058300' => 'mdo', 'MD05G1058400' => 'mdo', 'MD06G1113200' => 'mdo', 'MD07G1118900' => 'mdo', 'MD11G1145400' => 'mdo', 'MD14G1134300' => 'mdo', 'MD15G1331800' => 'mdo', 'MD17G1277800' => 'mdo', 'Medtr1g066620' => 'mtr', 'Medtr2g095440' => 'mtr', 'Medtr3g080970' => 'mtr', 'Medtr3g095010' => 'mtr', 'Medtr4g057795' => 'mtr', 'Medtr7g018380' => 'mtr', 'Medtr8g075040' => 'mtr', 'MELO3C005755.2' => 'cme', 'MELO3C007483.2' => 'cme', 'MELO3C019163.2' => 'cme', 'MELO3C019164.2' => 'cme', 'MELO3C022421.2' => 'cme', 'MELO3C024756.2' => 'cme', 'MELO3C026913.2' => 'cme', 'Migut.C00616' => 'egut', 'Migut.D02261' => 'egut', 'Migut.H02441' => 'egut', 'Migut.L00191' => 'egut', 'MSTRG.18686' => 'ama', 'MSTRG.21097' => 'ama', 'MSTRG.24855' => 'ama', 'MSTRG.2527' => 'ama', 'MSTRG.3455' => 'ama', 'Nitab4.5_0000106g0430' => 'nta', 'Nitab4.5_0000164g0210' => 'nta', 'Nitab4.5_0000617g0230' => 'nta', 'Nitab4.5_0002033g0050' => 'nta', 'Nitab4.5_0002044g0020' => 'nta', 'Nitab4.5_0002186g0080' => 'nta', 'Nitab4.5_0002367g0160' => 'nta', 'Nitab4.5_0002439g0090' => 'nta', 'Nitab4.5_0004207g0010' => 'nta', 'Nitab4.5_0004840g0050' => 'nta', 'Nitab4.5_0006520g0010' => 'nta', 'Nitab4.5_0012588g0010' => 'nta', 'Nn1g01896' => 'nnu', 'Nn1g05175' => 'nnu', 'Nn2g11596' => 'nnu', 'Nn3g18935' => 'nnu', 'Nn4g26615' => 'nnu', 'Nn5g27575' => 'nnu', 'Nn5g28891' => 'nnu', 'Oeu004789.2' => 'oeu', 'Oeu013559.1' => 'oeu', 'Oeu018373.1' => 'oeu', 'Oeu028523.2' => 'oeu', 'Oeu029896.1' => 'oeu', 'Oeu031510.1' => 'oeu', 'Oeu034860.1' => 'oeu', 'Oeu052098.1' => 'oeu', 'Oeu058013.1' => 'oeu', 'Os02g0826500' => 'osa', 'Os03g0441500' => 'osa', 'Os04g0658400' => 'osa', 'Os08g0564100' => 'osa', 'Os09g0572400' => 'osa', 'Os11g0603200' => 'osa', 'Peaxi162Scf00074g00436' => 'pax', 'Peaxi162Scf00106g02319' => 'pax', 'Peaxi162Scf00351g00524' => 'pax', 'Peaxi162Scf01038g00013' => 'pax', 'Peaxi162Scf01159g00229' => 'pax', 'PGR004G1701' => 'pgr', 'PGR004G2448' => 'pgr', 'PGR042G3327' => 'pgr', 'PGR119G2433' => 'pgr', 'PGSC0003DMG400007141' => 'stu', 'PGSC0003DMG400008119' => 'stu', 'PGSC0003DMG400012253' => 'stu', 'PGSC0003DMG400016576' => 'stu', 'PGSC0003DMG400019392' => 'stu', 'PGSC0003DMG400022987' => 'stu', 'Phvul.005G131600' => 'pvu', 'Phvul.006G000500' => 'pvu', 'Phvul.006G220700' => 'pvu', 'Phvul.009G139100' => 'pvu', 'Phvul.011G084000' => 'pvu', 'Potri.001G087300' => 'ptr', 'Potri.004G214300' => 'ptr', 'Potri.005G084800' => 'ptr', 'Potri.007G080600' => 'ptr', 'Potri.008G003300' => 'ptr', 'Potri.009G007800' => 'ptr', 'Potri.010G254400' => 'ptr', 'Pp3c13_13300' => 'ppa', 'Pp3c19_17230' => 'ppa', 'Pp3c1_13030' => 'ppa', 'Pp3c1_33480' => 'ppa', 'Pp3c1_33790' => 'ppa', 'Pp3c21_9610' => 'ppa', 'Pp3c2_12550' => 'ppa', 'Pp3c2_22140' => 'ppa', 'Pp3c2_24670' => 'ppa', 'Pp3c2_25580' => 'ppa', 'Pp3c3_23080' => 'ppa', 'Pp3c5_11340' => 'ppa', 'Pp3c9_3480' => 'ppa', 'PRCOL_00000464' => 'pco', 'PRCOL_00001734' => 'pco', 'PRCOL_00001979' => 'pco', 'PRCOL_00003140' => 'pco', 'PRCOL_00003689' => 'pco', 'PRCOL_00004601' => 'pco', 'PRCOL_00005155' => 'pco', 'PRCOL_00006429' => 'pco', 'PRCOL_00006585' => 'pco', 'PRCOL_00006648' => 'pco', 'PRCOL_00006723' => 'pco', 'PRCOL_00007280' => 'pco', 'Prupe.1G200300' => 'ppe', 'Prupe.5G126100' => 'ppe', 'Prupe.6G108600' => 'ppe', 'Prupe.6G171800' => 'ppe', 'Psat0s1250g0080' => 'psa', 'Psat0s3241g0080' => 'psa', 'Psat3g190440' => 'psa', 'Psat4g094360' => 'psa', 'Psat4g094400' => 'psa', 'Psat4g094520' => 'psa', 'Psat5g065080' => 'psa', 'Psat5g108480' => 'psa', 'PSO063G4170' => 'pso', 'PSO135G0585' => 'pso', 'PSO170G2892' => 'pso', 'PSO170G5235' => 'pso', 'PSO170G5940' => 'pso', 'PSO210G1708' => 'pso', 'PSO302G0112' => 'pso', 'PSO339G2583' => 'pso', 'PSO339G3985' => 'pso', 'PSO384G3259' => 'pso', 'PSO384G4224' => 'pso', 'PSO729G0145' => 'pso', 'PSO782G5048' => 'pso', 'PSO801G0358' => 'pso', 'QL01p015841' => 'qlo', 'QL02p029270' => 'qlo', 'QL03p015450' => 'qlo', 'QL04p038254' => 'qlo', 'QL04p038483' => 'qlo', 'QL04p089235' => 'qlo', 'QL05p031725' => 'qlo', 'QL06p031769' => 'qlo', 'QL06p031995' => 'qlo', 'QL06p040389' => 'qlo', 'QL06p040433' => 'qlo', 'QL93p0183_0018' => 'qlo', 'QL93p2017_0010' => 'qlo', 'RcHm_v2.0_Chr2g0116631' => 'rch', 'RcHm_v2.0_Chr2g0116661' => 'rch', 'RcHm_v2.0_Chr2g0116701' => 'rch', 'RcHm_v2.0_Chr2g0116711' => 'rch', 'RcHm_v2.0_Chr2g0116721' => 'rch', 'RcHm_v2.0_Chr2g0116821' => 'rch', 'RcHm_v2.0_Chr2g0116831' => 'rch', 'RcHm_v2.0_Chr2g0149831' => 'rch', 'RcHm_v2.0_Chr4g0395861' => 'rch', 'RcHm_v2.0_Chr4g0395871' => 'rch', 'RcHm_v2.0_Chr4g0402741' => 'rch', 'RcHm_v2.0_Chr4g0436571' => 'rch', 'RcHm_v2.0_Chr5g0057741' => 'rch', 'RcHm_v2.0_Chr6g0306241' => 'rch', 'RcHm_v2.0_Chr7g0186321' => 'rch', 'RcHm_v2.0_Chr7g0224491' => 'rch', 'Rhsim01G0212100' => 'rsi', 'Rhsim02G0248800' => 'rsi', 'Rhsim06G0129600' => 'rsi', 'Rhsim08G0006300' => 'rsi', 'Rhsim08G0007000' => 'rsi', 'Rhsim11G0117700' => 'rsi', 'Rhsim13G0098900' => 'rsi', 'Sabra01G0063600' => 'sbr', 'Sabra04G0145400' => 'sbr', 'Sabra07G0067700' => 'sbr', 'Sabra08G0001100' => 'sbr', 'Sabra09G0004500' => 'sbr', 'Sabra09G0004600' => 'sbr', 'Sabra10G0197800' => 'sbr', 'Sabra16G0000400' => 'sbr', 'Sabra16G0017700' => 'sbr', 'SalBow3G2382' => 'sbo', 'SalBow4G1633' => 'sbo', 'SalBow5G4766' => 'sbo', 'SalBow6G0295' => 'sbo', 'SalBow6G2752' => 'sbo', 'Sc03g0003450' => 'sci', 'Sc03g0003460' => 'sci', 'Sc03g0003470' => 'sci', 'Sc06g0005320' => 'sci', 'Sc06g0010940' => 'sci', 'Sc06g0010970' => 'sci', 'Sc09g0002800' => 'sci', 'Sc12g0009030' => 'sci', 'Sc12g0009140' => 'sci', 'Sc22g0004810' => 'sci', 'Sed0003208' => 'sed', 'Sed0009006' => 'sed', 'Sed0012802' => 'sed', 'Sed0014486' => 'sed', 'Sed0020629' => 'sed', 'Sed0022208' => 'sed', 'SEGI_12870' => 'sgi', 'SEGI_19176' => 'sgi', 'SEGI_23091' => 'sgi', 'SEGI_25059' => 'sgi', 'SEGI_26301' => 'sgi', 'SEGI_28136' => 'sgi', 'SEGI_36245' => 'sgi', 'SEGI_39789' => 'sgi', 'SGA_v2.0_scaffold226G43142' => 'sas', 'SGA_v2.0_scaffold263G45971' => 'sas', 'SGA_v2.0_scaffold2G01293' => 'sas', 'SGA_v2.0_scaffold36G14288' => 'sas', 'SGA_v2.0_scaffold37G14910' => 'sas', 'SGA_v2.0_scaffold51G18759' => 'sas', 'SGA_v2.0_scaffold89G27590' => 'sas', 'SGA_v2.0_scaffold89G27591' => 'sas', 'SHI06255' => 'shi', 'SHI21176' => 'shi', 'SMO171G0073' => 'smo', 'SMO174G0206' => 'smo', 'SMO196G0229' => 'smo', 'SMO347G0557' => 'smo', 'SMO358G0544' => 'smo', 'Solyc04g051800.3' => 'sly', 'Solyc06g074940.4' => 'sly', 'Solyc07g008610.3' => 'sly', 'Solyc08g082850.3' => 'sly', 'Solyc10g012190.3' => 'sly', 'Solyc11g069090.2' => 'sly', 'Sopen04g023150' => 'spe', 'Sopen06g031340' => 'spe', 'Sopen07g004550' => 'spe', 'Sopen08g031080' => 'spe', 'Sopen10g005950' => 'spe', 'Sopen11g027810' => 'spe', 'Sp2g00200' => 'spa', 'Sp2g27920' => 'spa', 'Sp5g07890' => 'spa', 'Sp6g22370' => 'spa', 'Sp6g33480' => 'spa', 'TAR381G0346' => 'tar', 'TAR623G0120' => 'tar', 'TAR625G1550' => 'tar', 'TAR626G1049' => 'tar', 'TAR626G1629' => 'tar', 'TAR628G1397' => 'tar', 'TAR629G1351' => 'tar', 'TAR633G0086' => 'tar', 'THA.LOC104799268' => 'tha', 'THA.LOC104799282' => 'tha', 'THA.LOC104810871' => 'tha', 'THA.LOC104818476' => 'tha', 'THA.LOC104823617' => 'tha', 'Thecc.01G113800' => 'tca', 'Thecc.03G303300' => 'tca', 'Thecc.03G304000' => 'tca', 'Thecc.09G247600' => 'tca', 'Thecc.09G348400' => 'tca', 'Thhalv10000390m.g' => 'esa', 'Thhalv10000736m.g' => 'esa', 'Thhalv10003741m.g' => 'esa', 'Thhalv10010156m.g' => 'esa', 'Thhalv10011003m.g' => 'esa', 'Thhalv10012861m.g' => 'esa', 'Thhalv10012937m.g' => 'esa', 'Thhalv10023304m.g' => 'esa', 'TPR.G11623' => 'tpr', 'TPR.G2271' => 'tpr', 'TPR.G22979' => 'tpr', 'TPR.G23105' => 'tpr', 'TPR.G23769' => 'tpr', 'TPR.G2515' => 'tpr', 'TPR.G4545' => 'tpr', 'TPR.G6176' => 'tpr', 'TWI15G0954' => 'twi', 'TWI60G0289' => 'twi', 'TWI75G1365' => 'twi', 'TWI77G0095' => 'twi', 'TWI79G0788' => 'twi', 'unitig_0.g1501' => 'ugi', 'unitig_32.g10772' => 'ugi', 'unitig_747.g21746' => 'ugi', 'unitig_747.g21977' => 'ugi', 'vmacro01678' => 'vma', 'vmacro03270' => 'vma', 'vmacro08459' => 'vma', 'vmacro11525' => 'vma', 'vmacro14408' => 'vma', 'vmacro18636' => 'vma', 'VMungo0540G0066' => 'vmu', 'VMungo0540G2156' => 'vmu', 'VMungo1080G0320' => 'vmu', 'VMungo1127G1142' => 'vmu', 'VMungo1127G1979' => 'vmu', 'VMungo1309G0054' => 'vmu', 'VMungo1309G3103' => 'vmu', 'Zm00001eb115000' => 'zma', 'Zm00001eb116920' => 'zma', 'Zm00001eb133140' => 'zma', 'Zm00001eb175760' => 'zma', 'Zm00001eb259290' => 'zma', 'Zm00001eb301430' => 'zma', 'Zm00001eb408960' => 'zma' ) $gf_id = 'HOM05D000681' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000681' ) $data_identifier = 'HOM05D000681' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 28, 'aar' => (int) 6, 'aag' => (int) 8, 'ach' => (int) 14, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 8, 'arhy' => (int) 15, 'ath' => (int) 5, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 15, 'bra' => (int) 9, 'can' => (int) 12, 'cansat' => (int) 4, 'chi' => (int) 10, 'cru' => (int) 6, 'car' => (int) 8, 'cbr' => (int) 3, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 11, 'ccl' => (int) 7, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 11, 'csa' => (int) 5, 'camsi' => (int) 7, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 9, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 38, 'fve' => (int) 7, 'gma' => (int) 10, 'ghi' => (int) 16, 'gra' => (int) 5, 'vvi' => (int) 10, 'han' => (int) 7, 'cav' => (int) 10, 'hma' => (int) 4, 'vpl' => (int) 8, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 5, 'lja' => (int) 9, 'lsa' => (int) 12, 'mes' => (int) 5, 'mpo' => (int) 5, 'mbi' => (int) 7, 'mco' => (int) 17, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 7, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 12, 'nnu' => (int) 7, 'oeu' => (int) 9, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 13, 'pco' => (int) 12, 'ppe' => (int) 4, 'psa' => (int) 8, 'pso' => (int) 14, 'qlo' => (int) 13, 'rch' => (int) 16, 'rsi' => (int) 7, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 10, 'sed' => (int) 6, 'sgi' => (int) 8, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 6, 'vmu' => (int) 7, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb408960' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1